1, AfterQC summary
AfterQC Version:0.9.6
sequencing:2*90 pair end
total reads:34.081 M
filtered out reads:567537.000 (1.588%)
total bases:2.995 G
filtered out bases:456738040.000 (14.201%)
estimated seq error:0.060%
adapter trimmed reads:4.309 M
adapter trimmed bases:187.226 M
auto trimmingfront:9, tail:0 (use -f0 -t0 to disable)
2, Good reads and bad reads after filtering
3, Sequence error distribution
4, Overlap length distribution
5, Read1 quality curve before filtering
6, Read1 base content distribution before filtering
7, Read1 GC curve before filtering
8, Read1 per base discontinuity before filtering
9, Read1 kmer strand bias before filtering
10, Read1 quality curve after filtering
11, Read1 base content distribution after filtering
12, Read1 GC curve after filtering
13, Read1 per base discontinuity after filtering
14, Read1 kmer strand bias after filtering
15, Read2 quality curve before filtering
16, Read2 base content distribution before filtering
17, Read2 GC curve before filtering
18, Read2 per base discontinuity before filtering
19, Read2 kmer strand bias before filtering
20, Read2 quality curve after filtering
21, Read2 base content distribution after filtering
22, Read2 GC curve after filtering
23, Read2 per base discontinuity after filtering
24, Read2 kmer strand bias after filtering